Cyclostephanos invisitatus is distinct by its flat valve face compared to C. dubius and C. tholiformis, which are concentrically undulate. Although similar in size and ornamentation, C. invisitatus differs from Stephanodiscus hantzschii by having a greater density of fascicles. Although similar in fascicle density, S. parvus differs from C. invisitatus by having coarse, punctate striae and a distinct fultoportula.