Stauroneis kishinena differs from S. americana by having strongly curved and expanded proximal raphe ends. Stauroneis finlandia and S. ursamaioris have protracted ends and more closely spaced striae. Stauroneis javanica, a fossil species from the Southern Hemisphere, has somewhat narrower valves (< 30 µm wide) and proximal raphe ends that are less strongly curved and expanded.