Gomphonema duplipunctatum may be distinguished from G. parvulum and other small species of Gomphonema by its rhombic-lanceolate valves, unprotracted apices, and the two isolated stigmoids in the central area.
Gomphonema germainii is similar outline and stria density but has a single stigmoid.
Gomphonema signyensis also has two stigmoids and overlaps in size, but differs in valve outline.
BioData Reference
Krammer and Lange-Bertalot 2/4 Pl 76 Fig 1-7