Gomphonema apuncto is more narrow and linear. 

Gomphonema christensenii has longer striae that extend into the axial area and a greater range of size. 

Gomphonema puiggarianum var. aequatorialis is larger, with a lower stria density.

LM scalebar = 10 µm
Length Range
13.5-38.3 µm
Width Range
3.8-5.5 µm
Striae in 10 µm
11-12 at the valve center, 14-16 at the apices
Gomphonema louisiananum LM1
Gomphonema louisiananum LM2
Gomphonema louisiananum LM3
Gomphonema louisiananum LM4
Gomphonema louisiananum LM5
Gomphonema louisiananum LM6
Gomphonema louisiananum LM7
Gomphonema louisiananum LM1 Gomphonema louisiananum LM2 Gomphonema louisiananum LM3 Gomphonema louisiananum LM4 Gomphonema louisiananum LM5 Gomphonema louisiananum LM6 Gomphonema louisiananum LM7

Gomphonema apuncto

J.H.Wallace 1960

Length Range
21.0-30.7 µm
Width Range
3.0-4.1 µm
Striae in 10 µm
13-16
Gomphonema apuncto LM4 Gomphonema apuncto LM1 Gomphonema apuncto LM3 Gomphonema apuncto LM2 Gomphonema apuncto LM5

Gomphonema christensenii

R.L.Lowe and Kociolek 1984

Length Range
32.8-57.4 µm
Width Range
6.1-7.8 µm
Striae in 10 µm
13-16
Gomphonema christenseni LM2 Gomphonema christenseni LM5 Gomphonema christenseni LM6 4 53920  Gchristenseni Holo 5 53920  Gchristenseni2 6 53920  Gchristenseni2 7 53920  Gchristenseni2

Also compare to

Gomphonema puiggarianum var. aequatorialis

Cleve